Commit ef518471 authored by T-B-F's avatar T-B-F

hmmscan -> hhsearch, bin -> src

parent 2e3169e5
...@@ -9,8 +9,8 @@ http://porthodom.readthedocs.org/en/latest/ ...@@ -9,8 +9,8 @@ http://porthodom.readthedocs.org/en/latest/
Requirement, the following softwares and database must be installed Requirement, the following softwares and database must be installed
-------------------------------------------------------------------- --------------------------------------------------------------------
pfam_scan.pl pfam_scan.pl
hmm database pfam-27.0 hhsuite database
hmmscan hhsearch (3.x)
proteinortho proteinortho
libboost libboost
......
...@@ -21,8 +21,10 @@ tar xzf pfamA_31.0.tgz ...@@ -21,8 +21,10 @@ tar xzf pfamA_31.0.tgz
### Execute the make_domat.sh script ### Execute the make_domat.sh script
chmod u+x make_domat.sh chmod u+x make_domat.sh
./make_domat.sh hhsuite_dbs/pfamA/pfam tmpdir/ ./make_domat.sh hhsuite_dbs/pfamA/pfam tmpdir/
It may take some time. It may take some time.
If you are an experienced user you can execute many of these steps in parallel using a computer grid. If you are an experienced user you can execute many of these steps in parallel using a computer grid.
......
...@@ -14,7 +14,7 @@ cfgDict = distutils.sysconfig.get_config_vars() ...@@ -14,7 +14,7 @@ cfgDict = distutils.sysconfig.get_config_vars()
progcompiler = 'g++ --std=c++0x' progcompiler = 'g++ --std=c++0x'
sources='src/compute_similarity.cpp' sources='src/compute_similarity.cpp'
cmd = '%s %s -o bin/compute_similarity -I%s %s -L%s -lpython%s %s %s' % \ cmd = '%s %s -o src/compute_similarity -I%s %s -L%s -lpython%s %s %s' % \
(progcompiler, (progcompiler,
cfgDict['LINKFORSHARED'], cfgDict['LINKFORSHARED'],
cfgDict['INCLUDEPY'], cfgDict['INCLUDEPY'],
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment