Commit 74d92e61 authored by Carsten Kemena's avatar Carsten Kemena

added missing test files

parent 0407b781
Pipeline #640 passed with stage
in 3 minutes and 35 seconds
<?xml version="1.0" encoding="ISO-8859-1"?>
<!DOCTYPE interpromatch SYSTEM "match_complete.dtd">
<interpromatch>
<release>
<dbinfo dbname="PANTHER" version="10.0" entry_count="95118" file_date="15-MAY-15" />
<dbinfo dbname="PFAM" version="28.0" entry_count="16230" file_date="20-MAY-15" />
<dbinfo dbname="PIRSF" version="3.01" entry_count="3285" file_date="07-APR-14" />
<dbinfo dbname="PRINTS" version="42.0" entry_count="2106" file_date="14-JUN-12" />
<dbinfo dbname="PRODOM" version="2006.1" entry_count="1894" file_date="23-APR-09" />
<dbinfo dbname="PROSITE" version="20.119" entry_count="1309" file_date="14-OCT-15" />
<dbinfo dbname="PROFILE" version="20.119" entry_count="1136" file_date="14-OCT-15" />
<dbinfo dbname="SMART" version="6.2" entry_count="1008" file_date="24-OCT-11" />
<dbinfo dbname="TIGRFAMs" version="15.0" entry_count="4488" file_date="16-SEP-14" />
<dbinfo dbname="GENE3D" version="3.5.0" entry_count="2626" file_date="18-MAR-12" />
<dbinfo dbname="SSF" version="1.75" entry_count="2019" file_date="08-NOV-10" />
<dbinfo dbname="SWISSPROT" version="2016_02" entry_count="550552" file_date="17-FEB-16" />
<dbinfo dbname="TREMBL" version="2016_02" entry_count="60971489" file_date="17-FEB-16" />
<dbinfo dbname="INTERPRO" version="56.0" entry_count="28926" file_date="18-FEB-16" />
<dbinfo dbname="GO" version="N/A" entry_count="23937" file_date="27-MAR-07" />
<dbinfo dbname="MEROPS" version="9.3" entry_count="3830" file_date="14-DEC-10" />
<dbinfo dbname="UniProt" version="2016_02" entry_count="61522041" file_date="17-FEB-16" />
<dbinfo dbname="HAMAP" version="201511.02" entry_count="2045" file_date="09-NOV-15" />
<dbinfo dbname="PFAMB" version="27.0" entry_count="20000" file_date="22-MAR-13" />
</release>
<protein id="test-seq1" name="test-seq1" length="530" crc64="AA3D2FB934A14063">
<match id="PF00001" name="Carbam_trans_N" dbname="PFAM" status="T" evd="HMMPfam">
<ipr id="IPR003696" name="Carbamoyltransferase" type="Domain" />
<lcn start="10" end="63" score="2.6E-8" />
</match>
<match id="PF00002" name="Carbam_trans_N" dbname="PFAM" status="T" evd="HMMPfam">
<ipr id="IPR003696" name="Carbamoyltransferase" type="Domain" />
<lcn start="104" end="312" score="4.8E-17" />
</match>
<match id="PF00003" name="Carbam_trans_C" dbname="PFAM" status="T" evd="HMMPfam">
<ipr id="IPR031730" name="Carbamoyltransferase, C-terminal" type="Domain" />
<lcn start="362" end="524" score="1.9E-44" />
</match>
</protein>
<protein id="test-seq2" name="test-seq2" length="530" crc64="AA3D2FB934A14063">
<match id="PF00002" name="Carbam_trans_N" dbname="PFAM" status="T" evd="HMMPfam">
<ipr id="IPR003696" name="Carbamoyltransferase" type="Domain" />
<lcn start="104" end="312" score="4.8E-17" />
</match>
<match id="PF00003" name="Carbam_trans_C" dbname="PFAM" status="T" evd="HMMPfam">
<ipr id="IPR031730" name="Carbamoyltransferase, C-terminal" type="Domain" />
<lcn start="362" end="524" score="1.9E-44" />
</match>
<match id="PF00001" name="Carbam_trans_N" dbname="PFAM" status="T" evd="HMMPfam">
<ipr id="IPR003696" name="Carbamoyltransferase" type="Domain" />
<lcn start="10" end="63" score="2.6E-8" />
</match>
</protein>
<protein id="test-seq3" name="test-seq3" length="530" crc64="AA3D2FB934A14063">
<match id="PF00002" name="Carbam_trans_N" dbname="PFAM" status="T" evd="HMMPfam">
<ipr id="IPR003696" name="Carbamoyltransferase" type="Domain" />
<lcn start="104" end="312" score="4.8E-17" />
</match>
<match id="PF00003" name="Carbam_trans_C" dbname="PFAM" status="T" evd="HMMPfam">
<ipr id="IPR031730" name="Carbamoyltransferase, C-terminal" type="Domain" />
<lcn start="362" end="524" score="1.9E-44" />
</match>
</protein>
\ No newline at end of file
# RADS version 2.1.2
# RADS Output v1
# run at Thu Mar 1 16:54:33 2018
#
# query file: -
# database: /local/home/ckeme_01/projects/domainWorld/RADS/tests/integrationTests/interPro-test
# matrix: /local/home/ckeme_01/.domainWorld/dsm/pfam-31.dsm
# ******************************************************************
# -------------------------------------------------------------------
Results for: manual entered query
Domain arrangement: PF00001 PF00002 PF00003
# score | normalized | SeqID | sequence length | domain arrangement
# -------------------------------------------------------------------
300 1.00 test-seq1 530 PF00001 10 63 PF00002 104 312 PF00003 362 524
300 1.00 test-seq2 530 PF00001 10 63 PF00002 104 312 PF00003 362 524
# RADS version 2.1.2
# RADS Output v1
# run at Thu Mar 1 17:11:58 2018
#
# query file: -
# database: /local/home/ckeme_01/projects/domainWorld/RADS/tests/integrationTests/interPro-test
# matrix: /local/home/ckeme_01/.domainWorld/dsm/pfam-31.dsm
# ******************************************************************
# -------------------------------------------------------------------
Results for: manual entered query
Domain arrangement: PF00001 PF00002 PF00003
# score | normalized | SeqID | sequence length | domain arrangement
# -------------------------------------------------------------------
300 1.00 test-seq1 530 PF00001 10 63 PF00002 104 312 PF00003 362 524
300 1.00 test-seq2 530 PF00001 10 63 PF00002 104 312 PF00003 362 524
190 0.69 test-seq3 530 PF00002 104 312 PF00003 362 524
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