Skip to content
Projects
Groups
Snippets
Help
Loading...
Help
Support
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
RADS
Project overview
Project overview
Details
Activity
Releases
Cycle Analytics
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Charts
Merge Requests
0
Merge Requests
0
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Charts
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Charts
Jobs
Commits
Open sidebar
domainWorld
RADS
Commits
689617a7
Commit
689617a7
authored
Jun 29, 2018
by
Carsten Kemena
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
fixed 1 shift in databases based on domain annotation files, added first test
parent
068a56fd
Changes
3
Hide whitespace changes
Inline
Side-by-side
Showing
3 changed files
with
39 additions
and
0 deletions
+39
-0
tests/data/test.da
tests/data/test.da
+17
-0
tests/data/test.db
tests/data/test.db
+0
-0
tests/integrationTests/results/testQuerySeq.txt
tests/integrationTests/results/testQuerySeq.txt
+22
-0
No files found.
tests/data/test.da
0 → 100644
View file @
689617a7
>PF00155
A0A000 394 40 380 4.9e-61
>PF00664;PF00005
A0A001 591 19 275 3.7e-07 360 503 1.9e-22
A0A002 564 18 278 2.9e-29 339 488 1.6e-26
>PF00873
A0A009DWE1 126 0 125 9.6e-32
>PF01370
A0A003 340 14 248 3.1e-52
>PF02310;PF04055
A0A007 407 2 104 3.9e-13 163 323 3.8e-25
>PF02543;PF02543;PF16861
A0A009 530 9 62 2.6e-08 103 311 4.9e-17 361 523 1.5e-44
>PF02543;PF16861
A0A010 530 9 62 2.6e-08 361 523 1.5e-44
>PF13537;PF00733
A0A004 645 48 161 1.4e-10 239 625 2.9e-82
tests/data/test.db
0 → 100644
View file @
689617a7
File added
tests/integrationTests/results/testQuerySeq.txt
0 → 100644
View file @
689617a7
# RADS version 2.3.0
# RADS Output v1
# run at Fri Jun 29 14:11:14 2018
#
# query file: /local/home/ckeme_01/projects/domainWorld/RADS/tests/data/query_seqs.fa
# database: /local/home/ckeme_01/projects/domainWorld/RADS/tests/integrationTests/interPro
# gap open penalty -50
# gap extension penalty -10
# matrix: /local/home/ckeme_01/.domainWorld/dsm/pfam-31.dsm
# all: false
# collapse: false
# ******************************************************************
# -------------------------------------------------------------------
Results for: tr|A0A000|A0A000_9ACTN
Domain arrangement: PF00155
# score | normalized | SeqID | sequence length | domain arrangement
# -------------------------------------------------------------------
100 1.00 A0A000 394 PF00155 42 382
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment