fixed 1 shift in databases based on domain annotation files, added first test

tests/data/test.da

+>PF00155
+A0A000 394 40 380 4.9e-61
+>PF00664;PF00005
+A0A001 591 19 275 3.7e-07 360 503 1.9e-22
+A0A002 564 18 278 2.9e-29 339 488 1.6e-26
+>PF00873
+A0A009DWE1 126 0 125 9.6e-32
+>PF01370
+A0A003 340 14 248 3.1e-52
+>PF02310;PF04055
+A0A007 407 2 104 3.9e-13 163 323 3.8e-25
+>PF02543;PF02543;PF16861
+A0A009 530 9 62 2.6e-08 103 311 4.9e-17 361 523 1.5e-44
+>PF02543;PF16861
+A0A010 530 9 62 2.6e-08 361 523 1.5e-44
+>PF13537;PF00733
+A0A004 645 48 161 1.4e-10 239 625 2.9e-82

tests/integrationTests/results/testQuerySeq.txt

+# RADS version 2.3.0
+# RADS Output v1
+# run at Fri Jun 29 14:11:14 2018
+#
+# query file: /local/home/ckeme_01/projects/domainWorld/RADS/tests/data/query_seqs.fa
+# database: /local/home/ckeme_01/projects/domainWorld/RADS/tests/integrationTests/interPro
+# gap open penalty -50
+# gap extension penalty -10
+# matrix: /local/home/ckeme_01/.domainWorld/dsm/pfam-31.dsm
+# all: false
+# collapse: false
+# ******************************************************************
+
+# -------------------------------------------------------------------
+Results for: tr|A0A000|A0A000_9ACTN
+Domain arrangement: PF00155
+
+# score | normalized | SeqID | sequence length | domain arrangement
+# -------------------------------------------------------------------
+100	1.00	A0A000	394	PF00155 42 382
+
+