Commit 689617a7 authored by Carsten Kemena's avatar Carsten Kemena

fixed 1 shift in databases based on domain annotation files, added first test

parent 068a56fd
>PF00155
A0A000 394 40 380 4.9e-61
>PF00664;PF00005
A0A001 591 19 275 3.7e-07 360 503 1.9e-22
A0A002 564 18 278 2.9e-29 339 488 1.6e-26
>PF00873
A0A009DWE1 126 0 125 9.6e-32
>PF01370
A0A003 340 14 248 3.1e-52
>PF02310;PF04055
A0A007 407 2 104 3.9e-13 163 323 3.8e-25
>PF02543;PF02543;PF16861
A0A009 530 9 62 2.6e-08 103 311 4.9e-17 361 523 1.5e-44
>PF02543;PF16861
A0A010 530 9 62 2.6e-08 361 523 1.5e-44
>PF13537;PF00733
A0A004 645 48 161 1.4e-10 239 625 2.9e-82
# RADS version 2.3.0
# RADS Output v1
# run at Fri Jun 29 14:11:14 2018
#
# query file: /local/home/ckeme_01/projects/domainWorld/RADS/tests/data/query_seqs.fa
# database: /local/home/ckeme_01/projects/domainWorld/RADS/tests/integrationTests/interPro
# gap open penalty -50
# gap extension penalty -10
# matrix: /local/home/ckeme_01/.domainWorld/dsm/pfam-31.dsm
# all: false
# collapse: false
# ******************************************************************
# -------------------------------------------------------------------
Results for: tr|A0A000|A0A000_9ACTN
Domain arrangement: PF00155
# score | normalized | SeqID | sequence length | domain arrangement
# -------------------------------------------------------------------
100 1.00 A0A000 394 PF00155 42 382
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