Commit 12541e9e authored by Elias Dohmen's avatar Elias Dohmen 🎓

integrationTest coverage upgrade

parent 37e79e2b
......@@ -64,3 +64,10 @@ A0019 11 20 11 20 PF00020 ATP-synt_C Family 3 46
A0019 21 30 21 30 PF00021 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0020 11 20 11 20 PF00022 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0020 21 30 21 30 PF00023 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0021 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0021 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0021 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0021 31 40 31 40 PF00030 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0022 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0022 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
A0023 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
......@@ -67,3 +67,7 @@ B0019 11 20 11 20 PF00020 ATP-synt_C Family 3 46
B0019 21 30 21 30 PF00021 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
B0020 11 20 11 20 PF00022 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
B0020 21 30 21 30 PF00023 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
B0021 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
B0021 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
B0021 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
B0022 31 40 31 40 PF00030 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
......@@ -61,3 +61,10 @@ C0019 11 20 11 20 PF00020 ATP-synt_C Family 3 46
C0019 21 30 21 30 PF00021 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0020 11 20 11 20 PF00022 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0020 21 30 21 30 PF00023 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0021 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0021 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0021 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0021 31 40 31 40 PF00030 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0022 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0022 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
C0023 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
......@@ -45,3 +45,10 @@ D0016 1 10 1 10 PF00020 ATP-synt_C Family 3 46
D0016 11 20 11 20 PF00021 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0016 21 30 21 30 PF00022 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0016 31 40 31 40 PF00023 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0021 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0021 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0021 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0021 31 40 31 40 PF00030 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0022 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0022 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
D0023 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
......@@ -54,3 +54,10 @@ E0019 11 20 11 20 PF00020 ATP-synt_C Family 3 46
E0019 21 30 21 30 PF00021 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0020 11 20 11 20 PF00022 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0020 21 30 21 30 PF00023 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0021 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0021 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0021 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0021 31 40 31 40 PF00030 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0022 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0022 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
E0023 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
......@@ -53,3 +53,10 @@ OG0019 11 20 11 20 PF00020 ATP-synt_C Family 3 4
OG0019 21 30 21 30 PF00021 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0020 11 20 11 20 PF00022 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0020 21 30 21 30 PF00023 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0021 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0021 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0021 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0021 31 40 31 40 PF00030 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0022 1 10 1 10 PF00031 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0022 11 20 11 20 PF00032 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
OG0023 21 30 21 30 PF00033 ATP-synt_C Family 3 46 63 26.4 5.3e-06 1 No_clan
Exact solutions: 14
Exact solutions: 15
Non-ambiguous solutions: 1
Ambiguous solutions: 1
Complex solutions: 2
Identities total: 77
Identities total: 98
Fusions: 4
Fissions: 2
Fissions: 3
Terminal Loss: 5
Terminal Emergences: 2
Single Domain Losses: 1
Single Domain Emergences: 1
Exact and non-ambiguous solutions: 15
Exact and non-ambiguous solutions: 16
Fusion rate: 26.67%
Fission rate: 13.33%
Terminal Loss rate: 33.33%
Terminal Emergence rate: 13.33%
Single Domain Loss rate: 6.67%
Single Domain Emergence rate: 6.67%
Fusion rate: 25.00%
Fission rate: 18.75%
Terminal Loss rate: 31.25%
Terminal Emergence rate: 12.50%
Single Domain Loss rate: 6.25%
Single Domain Emergence rate: 6.25%
......@@ -2,14 +2,14 @@
# Node ID #Fusions #Fissions #TerminalLosses #TerminalEmergences #SingleDomainLosses #SingleDomainEmergences #Identities
0 0 0 0 0 0 0 0
1 0 0 0 0 0 0 0
2 0 0 0 0 1 0 10
3 0 0 4 0 0 0 9
4 0 0 0 0 0 0 10
5 1 1 0 1 0 0 11
6 2 0 1 1 0 0 12
7 0 0 0 0 0 0 11
8 1 0 0 0 0 0 4
9 0 1 0 0 0 1 10
2 0 0 0 0 1 0 13
3 0 0 4 0 0 0 12
4 0 0 0 0 0 0 13
5 1 1 0 1 0 0 14
6 2 1 1 1 0 0 12
7 0 0 0 0 0 0 14
8 1 0 0 0 0 0 7
9 0 1 0 0 0 1 13
10 0 0 0 0 0 0 0
# Number of events per domain.
# Domain accession #Fusions #Fissions #TerminalLosses #TerminalEmergences #SingleDomainLosses #SingleDomainEmergences #Identities
......@@ -36,3 +36,7 @@ PF00020 1 0 0 0 0 0 14
PF00021 1 0 0 0 0 0 14
PF00022 1 0 0 0 0 0 14
PF00023 1 0 0 0 0 0 14
PF00030 0 1 0 0 0 0 7
PF00031 0 1 0 0 0 0 14
PF00032 0 1 0 0 0 0 14
PF00033 0 1 0 0 0 0 14
......@@ -11,6 +11,9 @@
2 PF00020 PF00021 0 0 0 0 0 0 1
2 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
2 PF00022 PF00023 0 0 0 0 0 0 1
2 PF00031 PF00032 0 0 0 0 0 0 1
2 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
2 PF00033 0 0 0 0 0 0 1
3 PF00001 0 0 0 0 0 0 1
3 PF00006 PF00007 PF00008 0 0 2 0 0 0 0
3 PF00006 PF00007 PF00008 PF00009 0 0 1 0 0 0 0
......@@ -24,6 +27,9 @@
3 PF00020 PF00021 0 0 0 0 0 0 1
3 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
3 PF00022 PF00023 0 0 0 0 0 0 1
3 PF00031 PF00032 0 0 0 0 0 0 1
3 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
3 PF00033 0 0 0 0 0 0 1
4 PF00001 0 0 0 0 0 0 1
4 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
4 PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
......@@ -34,6 +40,9 @@
4 PF00020 PF00021 0 0 0 0 0 0 1
4 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
4 PF00022 PF00023 0 0 0 0 0 0 1
4 PF00031 PF00032 0 0 0 0 0 0 1
4 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
4 PF00033 0 0 0 0 0 0 1
5 PF00001 0 0 0 0 0 0 1
5 PF00001 PF00004 0 0 0 1 0 0 0
5 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
......@@ -49,6 +58,9 @@
5 PF00020 PF00021 0 0 0 0 0 0 1
5 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
5 PF00022 PF00023 0 0 0 0 0 0 1
5 PF00031 PF00032 0 0 0 0 0 0 1
5 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
5 PF00033 0 0 0 0 0 0 1
6 PF00001 0 0 0 0 0 0 1
6 PF00001 PF00011 PF00012 1 0 0 0 0 0 0
6 PF00005 PF00001 0 0 0 1 0 0 0
......@@ -65,6 +77,8 @@
6 PF00020 PF00021 0 0 0 0 0 0 1
6 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
6 PF00022 PF00023 0 0 0 0 0 0 1
6 PF00030 0 1 0 0 0 0 0
6 PF00031 PF00032 PF00033 0 1 0 0 0 0 0
7 PF00001 0 0 0 0 0 0 1
7 PF00003 0 0 0 0 0 0 1
7 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
......@@ -76,12 +90,18 @@
7 PF00020 PF00021 0 0 0 0 0 0 1
7 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
7 PF00022 PF00023 0 0 0 0 0 0 1
7 PF00031 PF00032 0 0 0 0 0 0 1
7 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
7 PF00033 0 0 0 0 0 0 1
8 PF00001 0 0 0 0 0 0 1
8 PF00003 0 0 0 0 0 0 1
8 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
8 PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
8 PF00016 PF00017 PF00018 1 0 1 0 0 0 0
8 PF00020 PF00021 PF00022 PF00023 1 0 0 0 0 0 0
8 PF00031 PF00032 0 0 0 0 0 0 1
8 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
8 PF00033 0 0 0 0 0 0 1
9 PF00001 0 0 0 0 0 0 1
9 PF00002 0 0 0 0 0 1 0
9 PF00003 0 0 0 0 0 0 1
......@@ -95,6 +115,9 @@
9 PF00020 PF00021 0 0 0 0 0 0 1
9 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
9 PF00022 PF00023 0 0 0 0 0 0 1
9 PF00031 PF00032 0 0 0 0 0 0 1
9 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
9 PF00033 0 0 0 0 0 0 1
# Complex solutions:
4 PF00011 PF00012 0 0 0 0 0 0 0
4 PF00013 PF00014 PF00015 0 0 0 0 0 0 0
Exact solutions: 15
Non-ambiguous solutions: 1
Ambiguous solutions: 1
Complex solutions: 2
Identities total: 98
Fusions: 4
Fissions: 3
Terminal Loss: 5
Terminal Emergences: 2
Single Domain Losses: 1
Single Domain Emergences: 1
Exact and non-ambiguous solutions: 16
Fusion rate: 25.00%
Fission rate: 18.75%
Terminal Loss rate: 31.25%
Terminal Emergence rate: 12.50%
Single Domain Loss rate: 6.25%
Single Domain Emergence rate: 6.25%
# Number of events per node.
# Node ID #Fusions #Fissions #TerminalLosses #TerminalEmergences #SingleDomainLosses #SingleDomainEmergences #Identities
0 0 0 0 0 0 0 0
1 0 0 0 0 0 0 0
2 0 0 0 0 1 0 13
3 0 0 4 0 0 0 12
4 0 0 0 0 0 0 13
5 1 1 0 1 0 0 14
6 2 1 1 1 0 0 12
7 0 0 0 0 0 0 14
8 1 0 0 0 0 0 7
9 0 1 0 0 0 1 13
10 0 0 0 0 0 0 0
# Number of events per domain.
# Domain accession #Fusions #Fissions #TerminalLosses #TerminalEmergences #SingleDomainLosses #SingleDomainEmergences #Identities
PF00001 2 0 0 0 0 0 8
PF00002 0 0 0 0 0 1 0
PF00003 0 0 0 0 1 0 3
PF00004 0 0 0 1 0 0 0
PF00005 0 0 0 1 0 0 0
PF00006 0 2 2 0 0 0 13
PF00007 0 2 1 0 0 0 13
PF00008 0 2 1 0 0 0 13
PF00009 0 2 2 0 0 0 13
PF00010 0 2 3 0 0 0 13
PF00011 3 0 0 0 0 0 2
PF00012 3 0 0 0 0 0 2
PF00013 1 0 0 0 0 0 2
PF00014 1 0 0 0 0 0 2
PF00015 1 0 0 0 0 0 2
PF00016 1 0 0 0 0 0 14
PF00017 1 0 0 0 0 0 14
PF00018 1 0 0 0 0 0 14
PF00019 0 0 1 0 0 0 7
PF00020 1 0 0 0 0 0 14
PF00021 1 0 0 0 0 0 14
PF00022 1 0 0 0 0 0 14
PF00023 1 0 0 0 0 0 14
PF00030 0 1 0 0 0 0 7
PF00031 0 1 0 0 0 0 14
PF00032 0 1 0 0 0 0 14
PF00033 0 1 0 0 0 0 14
# Number of events per domain arrangement for last common ancestor between A:B.
# Domain arrangement #Fusions #Fissions #TerminalLosses #TerminalEmergences #SingleDomainLosses #SingleDomainEmergences #Identities
PF00001 0 0 0 0 0 0 1
PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
PF00016 PF00017 0 0 0 0 0 0 1
PF00016 PF00017 PF00018 PF00019 0 0 0 0 0 0 1
PF00018 0 0 0 0 0 0 1
PF00020 0 0 0 0 0 0 1
PF00020 PF00021 0 0 0 0 0 0 1
PF00021 PF00022 PF00023 0 0 0 0 0 0 1
PF00022 PF00023 0 0 0 0 0 0 1
PF00031 PF00032 0 0 0 0 0 0 1
PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
PF00033 0 0 0 0 0 0 1
# Number of events per domain arrangement.
# Node Domain arrangement #Fusions #Fissions #TerminalLosses #TerminalEmergences #SingleDomainLosses #SingleDomainEmergences #Identities
2 PF00001 0 0 0 0 0 0 1
2 PF00003 0 0 0 0 1 0 0
2 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
2 PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
2 PF00016 PF00017 0 0 0 0 0 0 1
2 PF00016 PF00017 PF00018 PF00019 0 0 0 0 0 0 1
2 PF00018 0 0 0 0 0 0 1
2 PF00020 0 0 0 0 0 0 1
2 PF00020 PF00021 0 0 0 0 0 0 1
2 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
2 PF00022 PF00023 0 0 0 0 0 0 1
2 PF00031 PF00032 0 0 0 0 0 0 1
2 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
2 PF00033 0 0 0 0 0 0 1
3 PF00001 0 0 0 0 0 0 1
3 PF00006 PF00007 PF00008 0 0 2 0 0 0 0
3 PF00006 PF00007 PF00008 PF00009 0 0 1 0 0 0 0
3 PF00007 PF00008 PF00009 PF00010 0 0 1 0 0 0 0
3 PF00008 PF00009 PF00010 0 0 2 0 0 0 0
3 PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
3 PF00016 PF00017 0 0 0 0 0 0 1
3 PF00016 PF00017 PF00018 PF00019 0 0 0 0 0 0 1
3 PF00018 0 0 0 0 0 0 1
3 PF00020 0 0 0 0 0 0 1
3 PF00020 PF00021 0 0 0 0 0 0 1
3 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
3 PF00022 PF00023 0 0 0 0 0 0 1
3 PF00031 PF00032 0 0 0 0 0 0 1
3 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
3 PF00033 0 0 0 0 0 0 1
4 PF00001 0 0 0 0 0 0 1
4 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
4 PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
4 PF00016 PF00017 0 0 0 0 0 0 1
4 PF00016 PF00017 PF00018 PF00019 0 0 0 0 0 0 1
4 PF00018 0 0 0 0 0 0 1
4 PF00020 0 0 0 0 0 0 1
4 PF00020 PF00021 0 0 0 0 0 0 1
4 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
4 PF00022 PF00023 0 0 0 0 0 0 1
4 PF00031 PF00032 0 0 0 0 0 0 1
4 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
4 PF00033 0 0 0 0 0 0 1
5 PF00001 0 0 0 0 0 0 1
5 PF00001 PF00004 0 0 0 1 0 0 0
5 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
5 PF00009 PF00008 PF00007 PF00006 0 1 0 0 0 0 0
5 PF00010 0 1 0 0 0 0 0
5 PF00011 PF00012 0 0 0 0 0 0 1
5 PF00011 PF00012 PF00013 PF00014 PF00015 1 0 0 0 0 0 0
5 PF00013 PF00014 PF00015 0 0 0 0 0 0 1
5 PF00016 PF00017 0 0 0 0 0 0 1
5 PF00016 PF00017 PF00018 PF00019 0 0 0 0 0 0 1
5 PF00018 0 0 0 0 0 0 1
5 PF00020 0 0 0 0 0 0 1
5 PF00020 PF00021 0 0 0 0 0 0 1
5 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
5 PF00022 PF00023 0 0 0 0 0 0 1
5 PF00031 PF00032 0 0 0 0 0 0 1
5 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
5 PF00033 0 0 0 0 0 0 1
6 PF00001 0 0 0 0 0 0 1
6 PF00001 PF00011 PF00012 1 0 0 0 0 0 0
6 PF00005 PF00001 0 0 0 1 0 0 0
6 PF00006 PF00007 0 0 3 0 0 0 0
6 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
6 PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
6 PF00011 PF00012 0 0 0 0 0 0 1
6 PF00011 PF00012 PF00001 1 0 0 0 0 0 0
6 PF00013 PF00014 PF00015 0 0 0 0 0 0 1
6 PF00016 PF00017 0 0 0 0 0 0 1
6 PF00016 PF00017 PF00018 PF00019 0 0 0 0 0 0 1
6 PF00018 0 0 0 0 0 0 1
6 PF00020 0 0 0 0 0 0 1
6 PF00020 PF00021 0 0 0 0 0 0 1
6 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
6 PF00022 PF00023 0 0 0 0 0 0 1
6 PF00030 0 1 0 0 0 0 0
6 PF00031 PF00032 PF00033 0 1 0 0 0 0 0
7 PF00001 0 0 0 0 0 0 1
7 PF00003 0 0 0 0 0 0 1
7 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
7 PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
7 PF00016 PF00017 0 0 0 0 0 0 1
7 PF00016 PF00017 PF00018 PF00019 0 0 0 0 0 0 1
7 PF00018 0 0 0 0 0 0 1
7 PF00020 0 0 0 0 0 0 1
7 PF00020 PF00021 0 0 0 0 0 0 1
7 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
7 PF00022 PF00023 0 0 0 0 0 0 1
7 PF00031 PF00032 0 0 0 0 0 0 1
7 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
7 PF00033 0 0 0 0 0 0 1
8 PF00001 0 0 0 0 0 0 1
8 PF00003 0 0 0 0 0 0 1
8 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
8 PF00010 PF00009 PF00008 PF00007 PF00006 0 0 0 0 0 0 1
8 PF00016 PF00017 PF00018 1 0 1 0 0 0 0
8 PF00020 PF00021 PF00022 PF00023 1 0 0 0 0 0 0
8 PF00031 PF00032 0 0 0 0 0 0 1
8 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
8 PF00033 0 0 0 0 0 0 1
9 PF00001 0 0 0 0 0 0 1
9 PF00002 0 0 0 0 0 1 0
9 PF00003 0 0 0 0 0 0 1
9 PF00006 PF00007 PF00008 PF00009 PF00010 0 0 0 0 0 0 1
9 PF00007 PF00006 0 1 0 0 0 0 0
9 PF00010 PF00009 PF00008 0 1 0 0 0 0 0
9 PF00016 PF00017 0 0 0 0 0 0 1
9 PF00016 PF00017 PF00018 PF00019 0 0 0 0 0 0 1
9 PF00018 0 0 0 0 0 0 1
9 PF00020 0 0 0 0 0 0 1
9 PF00020 PF00021 0 0 0 0 0 0 1
9 PF00021 PF00022 PF00023 0 0 0 0 0 0 1
9 PF00022 PF00023 0 0 0 0 0 0 1
9 PF00031 PF00032 0 0 0 0 0 0 1
9 PF00031 PF00032 PF00033 PF00030 0 0 0 0 0 0 1
9 PF00033 0 0 0 0 0 0 1
# Complex solutions:
4 PF00011 PF00012 0 0 0 0 0 0 0
4 PF00013 PF00014 PF00015 0 0 0 0 0 0 0
Exact solutions: 14
Exact solutions: 15
Non-ambiguous solutions: 1
Ambiguous solutions: 1
Complex solutions: 2
Fusions: 4
Fissions: 2
Fissions: 3
Terminal Loss: 5
Terminal Emergences: 2
Single Domain Losses: 1
Single Domain Emergences: 1
Exact and non-ambiguous solutions: 15
Exact and non-ambiguous solutions: 16
Fusion rate: 26.67%
Fission rate: 13.33%
Terminal Loss rate: 33.33%
Terminal Emergence rate: 13.33%
Single Domain Loss rate: 6.67%
Single Domain Emergence rate: 6.67%
Fusion rate: 25.00%
Fission rate: 18.75%
Terminal Loss rate: 31.25%
Terminal Emergence rate: 12.50%
Single Domain Loss rate: 6.25%
Single Domain Emergence rate: 6.25%
......@@ -6,7 +6,7 @@
3 0 0 4 0 0 0
4 0 0 0 0 0 0
5 1 1 0 1 0 0
6 2 0 1 1 0 0
6 2 1 1 1 0 0
7 0 0 0 0 0 0
8 1 0 0 0 0 0
9 0 1 0 0 0 1
......@@ -36,3 +36,7 @@ PF00020 1 0 0 0 0 0
PF00021 1 0 0 0 0 0
PF00022 1 0 0 0 0 0
PF00023 1 0 0 0 0 0
PF00030 0 1 0 0 0 0
PF00031 0 1 0 0 0 0
PF00032 0 1 0 0 0 0
PF00033 0 1 0 0 0 0
......@@ -13,6 +13,8 @@
6 PF00005 PF00001 0 0 0 1 0 0
6 PF00006 PF00007 0 0 3 0 0 0
6 PF00011 PF00012 PF00001 1 0 0 0 0 0
6 PF00030 0 1 0 0 0 0
6 PF00031 PF00032 PF00033 0 1 0 0 0 0
8 PF00016 PF00017 PF00018 1 0 1 0 0 0
8 PF00020 PF00021 PF00022 PF00023 1 0 0 0 0 0
9 PF00002 0 0 0 0 0 1
......
#!/usr/bin/env bats
@test "run DomRates IntegrationTest" {
@test "DomRates IntegrationTest" {
# test run without Identities (-i parameter)
run ../../build/domRates -t ../data/test_tree.nwk -a ../data/ -g OG -o results/test_out.txt -s results/test_out_stats.txt
[ $status == 0 ]
run diff results/compare_out.txt results/test_out.txt
......@@ -17,6 +18,7 @@
#run diff <(results/compare_output.txt) <(results/test_out.txt)
#[ $status == 0 ]
# test run with Identities (-i parameter)
run ../../build/domRates -t ../data/test_tree.nwk -a ../data/ -g OG -o results/test_ident_out.txt -s results/test_ident_out_stats.txt -i
[ $status == 0 ]
run diff results/compare_ident_out.txt results/test_ident_out.txt
......@@ -26,6 +28,16 @@
run diff results/compare_ident_out_stats_epd.txt results/test_ident_out_stats_epd.txt
[ $status == 0 ]
# test run with Identities (-i parameter) and statistics for LCA node of A and B (-n parameter)
run ../../build/domRates -t ../data/test_tree.nwk -a ../data/ -g OG -o results/test_nident_out.txt -s results/test_nident_out_stats.txt -i -n A:B
[ $status == 0 ]
run diff results/compare_nident_out.txt results/test_nident_out.txt
[ $status == 0 ]
run diff results/compare_nident_out_stats.txt results/test_nident_out_stats.txt
[ $status == 0 ]
run diff results/compare_nident_out_stats_epd.txt results/test_nident_out_stats_epd.txt
[ $status == 0 ]
run ../../build/domRates -h
[ $status == 0 ]
......@@ -37,5 +49,8 @@
rm results/test_ident_out_stats.txt
rm results/test_ident_out_stats_epd.txt
rm results/test_nident_out.txt
rm results/test_nident_out_stats.txt
rm results/test_nident_out_stats_epd.txt
}
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